PubMed İndeksli Yayınlar Koleksiyonu / PubMed Indexed Publications Collection

Permanent URI for this collectionhttps://hdl.handle.net/20.500.14517/21

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Citation Count: 0
3D and 4D printing of MXene-based composites: from fundamentals to emerging applications
(Royal Soc Chemistry, 2024) Bigham, Ashkan; Zarepour, Atefeh; Khosravi, Arezoo; Iravani, Siavash; Zarrabi, Ali; Genetik ve Biyomühendislik / Genetic and Bio-Engineering
The advent of three-dimensional (3D) and four-dimensional (4D) printing technologies has significantly improved the fabrication of advanced materials, with MXene-based composites emerging as a particularly promising class due to their exceptional electrical, mechanical, and chemical properties. This review explores the fundamentals of MXenes and their composites, examining their unique characteristics and the underlying principles of their synthesis and processing. We highlight the transformative potential of 3D and 4D printing techniques in tailoring MXene-based materials for a wide array of applications. In the field of tissue regeneration, MXene composites offer enhanced biocompatibility and mechanical strength, making them ideal for scaffolds and implants. For drug delivery, the high surface area and tunable surface chemistry of MXenes enable precise control over drug release profiles. In energy storage, MXene-based electrodes exhibit superior conductivity and capacity, paving the way for next-generation batteries and supercapacitors. Additionally, the sensitivity and selectivity of MXene composites make them excellent candidates for various (bio)sensing applications, from environmental monitoring to biomedical diagnostics. By integrating the dynamic capabilities of 4D printing, which introduces time-dependent shape transformations, MXene-based composites can further adapt to complex and evolving functional requirements. This review provides a comprehensive overview of the current state of research, identifies key challenges, and discusses future directions for the development and application of 3D and 4D printed MXene-based composites. Through this exploration, we aim to underscore the significant impact of these advanced materials and technologies on diverse scientific and industrial fields. This review highlights the developments in the 3D/4D printing of MXene-based composites, focusing on their application in tissue regeneration, drug delivery, sensing, and energy storage.
Citation Count: 1
3D FEA of Hollow and Solid Design Zirconia Dental Dowels
(Wiley, 2016) Kayahan, Mehmet Baybora; Ozkurt-Kayahan, Zeynep; Yay, Kubilay; Kazazoglu, Ender
PurposeThe aim of this study was to evaluate the stress distribution of hollow and solid design zirconia dowels. Materials and MethodsFinite element analysis (FEA) was used to investigate the influence of different dowel designs on the stress distribution of zirconia dowels. The coronal diameter of the dowel was 2.2 mm, the apical diameter was 1.8 mm, and the length was 15 mm. The diameter of the hollow space was 1.2 mm. Occlusal forces (both parallel and oblique) of 100 N were applied from the wider edge of the dowels simulating loads acting on the incisor during clenching and incising. The results were expressed in terms of von Mises criteria. ResultsFEA revealed differences in stress distribution. During parallel load, the maximum tensile stress of the hollow design (89.40 MPa) was greater than the solid design (43.30 MPa). During oblique load, the maximum tensile stress of the hollow design (1437.90 MPa) was greater than the solid design (917.96 MPa). The maximum deformation was observed in the coronal part of the dowel in both designs under the two load directions. ConclusionsFEA results showed that the hollow design zirconia dowels presented higher tensile stress.
Citation Count: 0
5-Year clinical performance of ceramic onlay and overlay restorations luted with light-cured composite resin
(Elsevier Sci Ltd, 2024) Yurdaguven, Gulsah Yenier; Ciftcioglu, Elif; Kazokoglu, Fatma Sehnaz; Kayahan, Mehmet Baybora; Endodonti / Endodontics
Objectives: This prospective clinical trial evaluated the clinical performance of ceramic partial coverage indirect adhesive restorations (PCIARs) in posterior teeth luted with a light-cured composite resin. Methods: From April 2016 to January 2017, a total of 60 patients (27 males, 33 females; mean age: 42.2 +/- 10.86 years old) received 83 glass-ceramic PCIARs (26 onlay, 57 overlay) made of IPS Emax CAD (Ivoclar Vivadent). All restorations were luted with a light-cured composite resin (Filtek Z250, 3 M ESPE) by two operators. Two independent calibrated examiners blinded to the operators performing the treatment evaluated the restorations at baseline, 1-year, and 5-year following FDI World Dental Federation criteria including esthetic, functional, and biological properties. Data were analyzed with the Friedman test and the Wilcoxon sign test (p p < 0.05). Results: None of the restorations failed due to fracture or retention loss. One restoration was clinically unsatisfactory because of secondary caries. Marginal staining (p:0.000), marginal adaptation (p:0.018) showed significant differences between 1-year and 5-year recall. Conclusions: The PCIARs demonstrated excellent clinical performance at 1-year period. The degradation parameters appeared as minor staining and minor irregularities after 5-year, without any affect on the clinical performance.
Citation Count: 21
Accuracy of single implant scans with a combined healing abutment-scan body system and different intraoral scanners: An in vitro study
(Elsevier Sci Ltd, 2021) Cakmak, Gulce; Donmez, Mustafa Borga; Atalay, Sevda; Yilmaz, Hakan; Kokat, Ali Murat; Yilmaz, Burak
Objective: The aim of the present study was to evaluate the accuracy of single implant scans with a combined healing abutment-scan body (CHA-SB) system using different intraoral scanners. Methods: A partially edentulous model with an implant was fabricated, and a CHA-SB system was secured on the implant. The model was scanned using an industrial-grade blue light scanner (ATOS Core 80) and a master reference model was generated (MRM). The model was also scanned with 4 different intraoral scanners (IOSs) [(Virtuo Vivo (VV), TRIOS 3 (T3), Omnicam (CO), and Primescan (PS)]. Test scans (n = 8) were superimposed over the MRM using the best fit algorithm (GOM Inspect 2018; GOM GmbH). After superimpositions, distance and angular deviations at selected areas on CHA-SB system were calculated. The data were analyzed with a 1way ANOVA and Tukey HSD tests for trueness and precision (alpha=0.05). Results: The differences in trueness (distance deviations) among tested IOSs were nonsignificant (P=.652). VV presented the highest angular deviations (P <=.031), and the angular deviations in other IOS scans were not found different (P >=.378). The precision of distance deviation data was not significantly different among scanners (P=.052). For the precision of angular deviation data, significant differences were found among IOSs (P=.002). Compared with PS (P=.007) and T3 (P=.014), VV had significantly lower precision, which was not significantly different than that of CO (P=.815). Conclusions: The accuracy (angular deviation) of scans of a combined healing abutment-scan body system on a single implant varied depending on the IOS. VirtuoVivo scans had the lowest accuracy in terms of angular deviations. When the distance deviation data were considered, scan accuracy of scanners was similar. Clinical Significance: A recently introduced combined healing abutment-scan body system combines the acquisition of both the implant and the soft tissue. When different intraoral scanners scan the combined healing abutment-scan body system, the scan accuracy may vary.
Citation Count: 21
Accuracy of six intraoral scanners for scanning complete-arch and 4-unit fixed partial dentures: An in vitro study
(Mosby-elsevier, 2022) Diker, Burcu; Tak, Onjen
Statement of problem. The digital scan accuracy of different intraoral scanners (IOSs) for long-span fixed prosthesis and the effect of the starting quadrant on accuracy is unclear. Purpose. The purpose of this in vitro study was to evaluate the accuracy of 6 IOSs for complete-arch and prepared teeth digitally isolated from the complete-arch and to determine the effect of the starting quadrant on accuracy. Material and methods. A maxillary model containing bilaterally prepared canines, first molar teeth, and edentulous spans between the prepared teeth was used. The model was scanned by using a highly accurate industrial scanner to create a digital reference data set. Six IOSs were evaluated: TRIOS, iTero, Planmeca Emerald, Cerec Omnicam, Primescan, and Virtuo Vivo. The model was scanned 10 times with each IOS by 1 operator according to the protocols described by the manufacturers. Five scans were made starting from the right quadrant (ScanR), followed by 5 scans starting from the left quadrant (ScanL). All data sets were obtained in standard tessellation language (STL) file format and were used to evaluate accuracy (trueness and precision) with a 3D analyzing software program (Geomagic Studio 12; 3D Systems) by using a best-fit alignment. The prepared teeth were digitally isolated from the complete-arch and evaluated with the analyzing software program. The Kruskal-Wallis and Mann-Whitney U statistical tests were used to detect differences for trueness and precision (alpha=.05). Results. Statistically significant differences were found regarding IOSs (P<.003) and scanning sequence (P<.05). The TRIOS showed the best trueness for the complete-arch, but not statistically different from Primescan, Virtuo Vivo, and iTero (P>.003). The lowest median values for precision of the complete-arch were also found using TRIOS, but no significant difference was found among the scanners (P>.003). In terms of trueness and precision, Primescan had the best accuracy for preparations. Emerald showed significant differences depending on the scanning sequence for complete-arch accuracy. ScanR for trueness (P=.021) and ScanL for precision (P=.004) showed improved results. However, Emerald, TRIOS, and Virtuo Vivo showed statistically significant differences in precision of preparations depending on scanning sequence. ScanL deviated less than ScanR when scanned with TRIOS (P=.025) and Emerald (P=.004), and the opposite with Virtuo Vivo (P=.008). In terms of preparations trueness, no significant difference was found between the ScanR and ScanL of any IOS (P>.05). Conclusions. Based on this in vitro study, the accuracy of the complete-arch and prepared teeth differed according to the IOS and scanning sequence.
Citation Count: 0
Advancing personalized medicine: Integrating statistical algorithms with omics and nano-omics for enhanced diagnostic accuracy and treatment efficacy
(Elsevier, 2024) Coskun, Abdurrahman; Ertaylan, Gokhan; Pusparum, Murih; Van Hoof, Rebekka; Kaya, Zelal Zuhal; Khosravi, Arezoo; Zarrabi, Ali; Genetik ve Biyomühendislik / Genetic and Bio-Engineering
Medical laboratory services enable precise measurement of thousands of biomolecules and have become an inseparable part of high-quality healthcare services, exerting a profound influence on global health outcomes. The integration of omics technologies into laboratory medicine has transformed healthcare, enabling personalized treatments and interventions based on individuals' distinct genetic and metabolic profiles. Interpreting laboratory data relies on reliable reference values. Presently, population-derived references are used for individuals, risking misinterpretation due to population heterogeneity, and leading to medical errors. Thus, personalized references are crucial for precise interpretation of individual laboratory results, and the interpretation of omics data should be based on individualized reference values. We reviewed recent advancements in personalized laboratory medicine, focusing on personalized omics, and discussed strategies for implementing personalized statistical approaches in omics technologies to improve global health and concluded that personalized statistical algorithms for interpretation of omics data have great potential to enhance global health. Finally, we demonstrated that the convergence of nanotechnology and omics sciences is transforming personalized laboratory medicine by providing unparalleled diagnostic precision and innovative therapeutic strategies.
Citation Count: 5
Altered methyltetrahydrofolate reductase gene polymorphism in mothers of children with attention deficit and hyperactivity disorder
(Pergamon-elsevier Science Ltd, 2019) Baykal, Saliha; Batar, Bahadir; Nalbantoglu, Aysin; Albayrak, Yakup; Hanci, Halil; Potas, Nihan; Karabekiroglu, Koray
Attention Deficit and Hyperactivity Disorder (ADHD) is one of the most common psychiatric disorders in childhood and causes significant functional impairments in children. Behavioral genetic and molecular genetic studies have provided significant evidence in terms of highlighting the etiology of ADHD. Folate deficiency during pregnancy is an established risk factor for ADHD. Polymorphisms in the Methyltetrahydrofolate Reductase (MTHFR) encoding gene, such as A1298C and C667T, are associated with the decreased bioavailability of folate, and this condition can act like folate deficiency. In the literature, no study has investigated MTHFR polymorphisms in mothers of children with ADHD. Sixty-four children diagnosed with ADHD and their mothers as well as 40 healthy children and their mothers participated in this study. MTHFR polymorphisms were investigated in all participants. Comparison of the C677C and A1298C MTHFR polymorphisms in children with and without ADHD revealed no significant differences. We found that the maternal C677C_CT genotype counts, both observed and expected values, were significantly different from those based on Hardy-Weinberg Principle Analysis in the ADHD group. The most important result of this study was that maternal C677C MTHFR gene polymorphisms are significant risk factors in for ADHD, and we argue that children with ADHD are exposed to folate deficiency, even if their mothers received a sufficient amount of folate during pregnancy. This result also highlights one of the genetic factors of ADHD. Further studies should be performed to confirm this finding.
Citation Count: 1
Amine-functionalized mesoporous silica nanoparticles decorated by silver nanoparticles for delivery of doxorubicin in breast and cervical cancer cells
(Elsevier, 2024) Ghobadi, Melika; Salehi, Saeideh; Ardestani, Mohammad Taha Salmanifard; Mousavi-Khattat, Mohammad; Shakeran, Zahra; Khosravi, Arezoo; Zarrabi, Ali; Genetik ve Biyomühendislik / Genetic and Bio-Engineering
Nanocarriers have demonstrated promising potential in the delivery of various anticancer drugs and in improving the efficiency of the treatment. In this study, silver nanoparticles (AgNPs) were green-synthesized using the extracts of different parts of the pomegranate plant, including the peel, flower petals, and calyx. To obtain the most efficient extract used for the green synthesis of AgNPs, all three types of synthesized nanoparticles were characterized. Then, (3-Aminopropyl) triethoxysilane-functionalized mesoporous silica nanoparticles (MSNs-APTES) decorated with AgNPs were fabricated via a one-pot green-synthesis method. AgNPs were directly coated on the surface of MSNs-APTES by adding pomegranate extract enriched with a source of reducing agent leading to converting the silver ion to AgNPs. The MSN-APTES-AgNPs (MSNs-AgNPs) have been thoroughly characterized using nanoparticle characterization techniques. In addition, DNA cleavage and hemolysis activities of the synthesized nanoparticles were analyzed, confirming the biocompatibility of synthesized nanoparticles. The Doxorubicin (DOX, as a breast/cervical anti-cancer drug) loading (42.8%) and release profiles were investigated via UV-visible spectroscopy. The fibroblast, breast cancer, and cervical cancer cells' viability against DOX-loaded nanoparticles were also studied. The results of this high drug loading, uniform shape, and small functionalized nanoparticles demonstrated its great potential for breast and cervical cancer management.
Citation Count: 0
Application of 3D, 4D, 5D, and 6D bioprinting in cancer research: what does the future look like?
(Royal Soc Chemistry, 2024) Khorsandi, Danial; Rezayat, Dorsa; Sezen, Serap; Ferrao, Rafaela; Khosravi, Arezoo; Zarepour, Atefeh; Zarrabi, Ali; Genetik ve Biyomühendislik / Genetic and Bio-Engineering
The application of three- and four-dimensional (3D/4D) printing in cancer research represents a significant advancement in understanding and addressing the complexities of cancer biology. 3D/4D materials provide more physiologically relevant environments compared to traditional two-dimensional models, allowing for a more accurate representation of the tumor microenvironment that enables researchers to study tumor progression, drug responses, and interactions with surrounding tissues under conditions similar to in vivo conditions. The dynamic nature of 4D materials introduces the element of time, allowing for the observation of temporal changes in cancer behavior and response to therapeutic interventions. The use of 3D/4D printing in cancer research holds great promise for advancing our understanding of the disease and improving the translation of preclinical findings to clinical applications. Accordingly, this review aims to briefly discuss 3D and 4D printing and their advantages and limitations in the field of cancer. Moreover, new techniques such as 5D/6D printing and artificial intelligence (AI) are also introduced as methods that could be used to overcome the limitations of 3D/4D printing and opened promising ways for the fast and precise diagnosis and treatment of cancer. Recent advancements pertaining to the application of 3D, 4D, 5D, and 6D bioprinting in cancer research are discussed, focusing on important challenges and future perspectives.
Citation Count: 12
An application of raman spectroscopy in combination with machine learning to determine gastric cancer spectroscopy marker
(Elsevier Ireland Ltd, 2023) Guleken, Zozan; Jakubczyk, Pawel; Paja, Wieslaw; Pancerz, Krzysztof; Wosiak, Agnieszka; Yaylim, Ilhan; Depciuch, Joanna; İşletme / Business Administration
Background and Objective: Globally, gastric carcinoma (Gca) ranks fifth in terms of incidence and third in terms of mortality. Higher serum tumor markers (TMs) than those from healthy individuals, led to TMs clinical application as diagnostic biomarkers for Gca. Actually, there is no accurate blood test to diagnose Gca. Methods: Raman spectroscopy is applied as an efficient, credible, minimally invasive technique to evalu-ate the serum TMs levels in blood samples. After curative gastrectomy, serum TMs levels are important in predicting the recurrence of gastric cancer, which must be detected early. The experimentally assesed TMs levels using Raman measurements and EL ISA test were used to develop a prediction model based on machine learning techniques. A total of 70 participants diagnosed with gastric cancer after surgery ( n = 26) and healthy ( n = 44) were comrpised in this study. Results: In the Raman spectra of gastric cancer patients, an additional peak at 1182 cm -1 was observed and, the Raman intensity of amide III, II, I, and CH2 proteins as well as lipids functional group was higher. Furthermore, Principal Component Analysis (PCA) showed, that it is possible to distinguish between the control and Gca groups using the Raman range between 800 and 1800 cm -1, as well as between 2700 and 30 0 0 cm -1. The analysis of Raman spectra dynamics in gastric cancer and healthy patients showed, that the vibrations at 1302 and 1306 cm -1 were characteristic for cancer patients. In addition, the selected machine learning methods showed classification accuracy of more than 95%, while obtaining an AUROC of 0.98. Such results were obtained using Deep Neural Networks and the XGBoost algorithm. Conclusions: The obtained results suggest, that Raman shifts at 1302 and 1306 cm -1 could be spectro-scopic markers of gastric cancer.(c) 2023 Elsevier B.V. All rights reserved.
Citation Count: 2
Assessment of 13 in silico pathogenicity methods on cancer-related variants
(Pergamon-elsevier Science Ltd, 2022) Yazar, Metin; Ozbek, Pemra; Genetik ve Biyomühendislik / Genetic and Bio-Engineering
Single nucleotide variants (SNVs) are single base substitutions that could influence many biological functions in the cell including gene expression, protein folding, and protein-protein interactions among many others. Thus, predictions of functional effects of cancer-related variants are crucial for drug responses and treatment options in clinical oncology. Experimental identification of these effects could be slow, inefficient, and inconvenient, hence in silico methods are gaining popularity in predicting the variants' effects. There are many studies on the cancer variants, however, up to date, none of these have been aimed to assess the performance metrics of in silico pathogenicity methods on functional relevance of cancer variants obtained from ClinVar. To this end, we examined the pathogenicity predictions of cancer-related variant datasets of 8 cancer types (bladder, breast, colon, colorectal, kidney, liver, lung, and pancreas cancer) retrieved from ClinVar using 13 different in silico methods including SIFT, CADD, FATHMM-weighted, FATHMM-unweighted, GERP(++), MetaSVM, Mutation Assessor, MutationTaster, MutPred, PolyPhen-2, Provean, Revel and VEST4. A combination of statistical performance metric analysis, prediction distribution frequency data and ROC curve analysis results have suggested that; among all in silico prediction tools, top three tools with the highest discriminatory power were found to be MutPred (AUC = 0.677), MetaSVM (AUC = 0.645) and Revel (AUC = 0.637).
Citation Count: 31
Assessment of structural protein expression by FTIR and biochemical assays as biomarkers of metabolites response in gastric and colon cancer
(Elsevier, 2021) Guleken, Zozan; Bulut, Huri; Gultekin, Guldal Inal; Arikan, Soykan; Yaylim, Ilhan; Hakan, Mehmet Tolgahan; Depciuch, Joanna; İşletme / Business Administration; Fizyoloji / Physiology
Colon and gastric cancers are the widespread benign types of cancers which are synchronous and metachronous neoplasms. In terms of the progression and progress of the disease, metabolic processes and differentiation in protein structures have an important role in for treatment of the disease. In this study we proposed to investigate the metabolic process and the differentiation of protein secondary structure among colon and gastric cancer as well as healthy controls using biochemistry and Fourier Transform InfraRed spectroscopy (FTIR) methods. For this purpose, we measured blood serum of 133 patients, which were conducted upon oncology department (45 colon cancer, 45 gastric cancer and 43 control individuals). The obtained spectroscopic results and biochemical assays showed significant reduction in the amount of functional groups in cancer groups contrary with total protein measurements and structure of protein differences between colon and gastric cancers. Differentiations were visible in serum levels of CEA, CA-125, CA-15-3, CA-19-9 AFP (Alpha fetoprotein) of gastric and colon cancer patients as well as in amide III and secondly described amide I regions. Our findings suggest that amide I bonds in colon cancer cells can be helpful in diagnosis of colon cancer. Indeed, our results showed that metabolic processes were higher in gastric cancer group than in colon cancer. Hence, FTIR spectroscopy and curve-fitting analysis of amide I profile can be successfully applied as tools for identifying quantitative and qualitative changes of proteins in human cancerous blood serum. However, what is very important, in PCA analysis we see, that the scatter plot of PC1 (variability 80%) and PC2 (variability 15%) show that the data related to the control and two cancer groups are clustered together with different magnitudes and directions.
Citation Count: 7
Association of Leptin Levels and Disease Activity in Patients with Early Rheumatoid Arthritis
(Elsevier Inc., 2021) Taylan,A.; Akinci,B.; Toprak,B.; Birlik,M.; Arslan,F.D.; Ekerbicer,H.; Engin,B.
Objective: Previous studies have reported a link between metabolic parameters and disease activity in rheumatoid arthritis (RA), although the evidence is limited in early RA. We aimed to investigate the relationship between disease activity and adipocytokine levels in subjects with early RA. Methods: Forty-seven patients with early RA (symptom duration ≤12 months) were enrolled. Disease activity was determined by DAS28-CRP. Patients were treated with DMARDs according to the EULAR recommendations. Subjects were tested before and five months after treatment. Results: Early RA patients with high disease activity (DAS28-CRP > 4.9) had greater BMI (31.2 ± 6.8 kg/m2 vs. 26.7 ± 4.1 kg/m2; p = 0.006) and higher leptin levels (14.62 ± 15.60 ng/mL vs. 7.82 ± 8.00 ng/mL; p = 0.048). Levels of other adipocytokines were not significantly different. Leptin levels were similar in subjects with mild/moderate disease activity and controls. DAS28-CRP was correlated with leptin (r = 0.303, p = 0.039). Leptin levels decreased significantly after treatment (from 10.86 ± 12.34 ng/mL to 9.22 ± 9.29 ng/mL; p = 0.047) along with insulin levels (from 13.68 ± 21.90 mU/L to 7.09 ± 4.72 mU/L; p = 0.010) and HOMA-IR (from 4.39 ± 9.53 to 1.70 ± 1.38; p = 0.012). HDL cholesterol levels increased (from 41 ± 10 mg/dL48 ± 10 mg/dL; p <0.001). Conclusion: Leptin levels were associated with disease activity in patients with early RA and these levels decreased after treatment with DMARDs. Further research is needed to elicit leptin's role to regulate disease activity in early RA. © 2021 Instituto Mexicano del Seguro Social (IMSS)
Citation Count: 15
Associations between Periapical Health of Maxillary Molars and Mucosal Thickening of Maxillary Sinuses in Cone-beam Computed Tomographic Images: A Retrospective Study
(Elsevier Science inc, 2020) Sakir, Merve; Yalcinkaya, Sebnem Ercalik
Introduction: This retrospective study aimed to assess the radiologic characteristics of the possible associations between mucosal thickening of the maxillary sinuses (MSs) and periodontal and anatomic conditions of healthy and diseased maxillary teeth. Methods: The periapical health of the maxillary molars in cone-beam computed tomographic (CBCT) images from 50 patients (mean age = 40.60 +/- 14.59 years) was evaluated using the CBCT-periapical index. Anatomic associations between maxillary molars and the inferior wall of the MSs and periodontal bone loss and its relation to MS pathology were assessed. The possible effects of these conditions on mucosal thickening of MSs were analyzed. Kruskal-Wallis, Mann-Whitney U, chi-square, and logistic regression (for relative risk) tests were used for statistical analysis. Results: : CBCT-periapical index 4 was the most frequently encountered apical periodontitis (AP) lesion. The risk for pathologic changes in the MSs was significantly higher in the presence of AP (P < .001). This risk was 62.364 times greater than that in areas of MSs adjacent to healthy teeth of the same patient (95% confidence interval, 7.968-488.14). Thicker MS mucosae were detected when the molar roots with AP were closer to the MSs (P < .004). No statistically significant difference was found between periodontal status and MS pathology. Conclusions: The findings of this study showed that MSs were affected by the endodontic health of adjacent molar teeth. Dental and medical practitioners should take into consideration the possible odontogenic causes while examining pathologic changes in the MS.
Citation Count: 6
Bioaccessibility of terebinth (Pistacia terebinthus L.) coffee polyphenols: Influence of milk, sugar and sweetener addition
(Elsevier Sci Ltd, 2022) Kamiloglu, Senem; Ozdal, Tugba; Bakir, Sena; Capanoglu, Esra
In this study, terebinth coffee formulations were prepared with whole or skimmed milk with or without sugar/ sweetener in order to study the matrix effect on the bioaccessibility of terebinth polyphenols. Quercetin glycosides and catechin were the major flavonoids identified in the terebinth formulations, whereas gallic, protocatechuic, syringic and ellagic acids were determined as the non-flavonoid compounds. The in vitro gastrointestinal digestion model results revealed that addition of whole milk to terebinth coffee increased the total bioaccessible flavonoids significantly (45%) (p < 0.05), whereas skim milk addition did not result in any significant change. Furthermore, antioxidant capacity results measured with CUPRAC assay showed that addition of milk alone or together with sugar/sweetener increases the bioaccessibility of terebinth coffee antioxidants (36-70%) (p < 0.05). Overall, terebinth coffee + whole milk + sugar formulation was found to contain the highest amount of bioaccessible flavonoid and non-flavonoid compounds (42.71-47.07 mg/100 g).
Citation Count: 0
Biohybrid Micro/Nanorobots: Pioneering the Next Generation of Medical Technology
(Wiley, 2024) Zarepour, Atefeh; Khosravi, Arezoo; Iravani, Siavash; Zarrabi, Ali; Genetik ve Biyomühendislik / Genetic and Bio-Engineering
Biohybrid micro/nanorobots hold a great potential for advancing biomedical research. These tiny structures, designed to mimic biological organisms, offer a promising method for targeted drug delivery, tissue engineering, biosensing/imaging, and cancer therapy, among other applications. The integration of biology and robotics opens new possibilities for minimally invasive surgeries and personalized healthcare solutions. The key challenges in the development of biohybrid micro/nanorobots include ensuring biocompatibility, addressing manufacturing scalability, enhancing navigation and localization capabilities, maintaining stability in dynamic biological environments, navigating regulatory hurdles, and successfully translating these innovative technologies into clinical applications. Herein, the recent advancements, challenges, and future perspectives related to the biomedical applications of biohybrid micro/nanorobots are described. Indeed, this review sheds light on the cutting-edge developments in this field, providing researchers with an updated overview of the current potential of biohybrid micro/nanorobots in the realm of biomedical applications, and offering insights into their practical applications. Furthermore, it delves into recent advancements in the field of biohybrid micro/nanorobotics, providing a comprehensive analysis of the current state-of-the-art technologies and their future applications in the biomedical field. This review is about biohybrid micro/nanorobots, a class of micro/nanorobotics composed of a biological part and an artificial sector. It also explores recent advancements in biomedical applications of biohybrid micro/nanorobots by focusing on their potential usage in targeted drug delivery, tissue engineering, cancer therapy, and imaging-guided therapy. image
Citation Count: 0
Biotin-functionalized nanoparticles: an overview of recent trends in cancer detection
(Royal Soc Chemistry, 2024) Fathi-karkan, Sonia; Sargazi, Saman; Shojaei, Shirin; Farasati Far, Bahareh; Mirinejad, Shekoufeh; Cordani, Marco; Ghavami, Saeid; Genetik ve Biyomühendislik / Genetic and Bio-Engineering
Electrochemical bio-sensing is a potent and efficient method for converting various biological recognition events into voltage, current, and impedance electrical signals. Biochemical sensors are now a common part of medical applications, such as detecting blood glucose levels, detecting food pathogens, and detecting specific cancers. As an exciting feature, bio-affinity couples, such as proteins with aptamers, ligands, paired nucleotides, and antibodies with antigens, are commonly used as bio-sensitive elements in electrochemical biosensors. Biotin-avidin interactions have been utilized for various purposes in recent years, such as targeting drugs, diagnosing clinically, labeling immunologically, biotechnology, biomedical engineering, and separating or purifying biomolecular compounds. The interaction between biotin and avidin is widely regarded as one of the most robust and reliable noncovalent interactions due to its high bi-affinity and ability to remain selective and accurate under various reaction conditions and bio-molecular attachments. More recently, there have been numerous attempts to develop electrochemical sensors to sense circulating cancer cells and the measurement of intracellular levels of protein thiols, formaldehyde, vitamin-targeted polymers, huwentoxin-I, anti-human antibodies, and a variety of tumor markers (including alpha-fetoprotein, epidermal growth factor receptor, prostate-specific Ag, carcinoembryonic Ag, cancer antigen 125, cancer antigen 15-3, etc.). Still, the non-specific binding of biotin to endogenous biotin-binding proteins present in biological samples can result in false-positive signals and hinder the accurate detection of cancer biomarkers. This review summarizes various categories of biotin-functional nanoparticles designed to detect such biomarkers and highlights some challenges in using them as diagnostic tools. Biotin-functionalized nanoparticles enhance cancer detection by targeting biotin receptors, which are overexpressed on cancer cells. This targeted approach improves imaging accuracy and efficacy in identifying cancerous tissues.
Citation Count: 0
Carboxymethyl cellulose/sodium alginate hydrogel with anti-inflammatory capabilities for accelerated wound healing; In vitro and in vivo study
(Elsevier, 2024) Hosseini, Seyed Mohammad Reza; Heydari, Parisa; Namnabat, Mahtab; Azadani, Reyhaneh Nasr; Gharibdousti, Fateme Azimi; Rizi, Elmira Mousavi; Zarrabi, Ali; Genetik ve Biyomühendislik / Genetic and Bio-Engineering
Recently, managing the chronic skin wounds has become increasingly challenging for healthcare professionals due to the intricate orchestration of cellular and molecular processes involved that lead to the uncontrollable inflammatory reactions which hinder the healing process. Therefore, different types of wound dressings with immunomodulatory properties have been developed in recent years to effectively regulate the immune responses, enhance angiogenesis, promote re-epithelialization, and accelerate the wound healing process. This study aims to develop a new type of immunomodulatory wound dressing utilizing carboxymethyl cellulose (CMC)/sodium alginate (Alg)-simvastatin (SIM) to simultaneously enhance the inflammatory responses and the wound healing ratio. The CMC/Alg-SIM hydrogels exhibited appropriate swelling ratio, water vapor transmission rate, and desirable degradation rate, depending on the SIM content. The fabricated dressing showed sustained release of SIM (during 5 days) that improved the proliferation of skin cells. According to the in vitro findings, the CMC/Alg-SIM hydrogel exhibited controlled pro-inflammatory responses (decreased 2.5- and 1.6-times IL-6 and TNF-alpha, respectively) and improved secretion of anti-inflammatory cytokines (increased 1.5- and 1.3-times IL-10 and TGF-beta, respectively) in comparison with CMC/Alg. Furthermore, the CMC/Alg-SIM hydrogel facilitated rapid wound healing in the rat model with a full-thickness skin defect. After 14 days post-surgery, the wound healing ratio in the CMC/Alg hydrogel group (-93%) was significantly greater than the control group (-58%). Therefore, the engineered CMC/Alg-SIM hydrogel with desired immunomodulatory properties possesses the potential to enhance and accelerate skin regeneration for the management of chronic wound healing.
Citation Count: 0
Cardiac Failure Associated with Medical Therapy of Benign Prostatic Hyperplasia: A Population Based Study. Letter
(Lippincott Williams & Wilkins, 2021) Coner, Ali; Yildiz, Ali; Ipekci, Tumay
[No Abstract Available]
Citation Count: 0
Cardiac Failure Associated with Medical Therapy of Benign Prostatic Hyperplasia: A Population Based Study. Letter.
(Wolters Kluwer Health, 2021) Çoner,A.; Yildiz,A.; İpekçi,T.
[No abstract available]

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